Izmir Institute of Technology

Permanent URI for this communityhttp://65.108.157.135:4000/handle/123456789/1

Browse

Now showing 1 - 20 of 66

Advances in Electrospun Fiber-Based Flexible Nanogenerators for Wearable Applications
(Wiley-v C H verlag Gmbh, 2021) Arica, Tugce A.; Isik, Tugba; Guner, Tugrul; Horzum, Nesrin; Demir, Mustafa M.; Demir, Mustafa
In today's digital age, the need and interest in personal and portable electronics shows a dramatic growth trend in daily life parallel to the developments in sensors technologies and the internet. Wearable electronics that can be attached to clothing, accessories, and the human body are one of the most promising subfields. The energy requirement for the devices considering the reduction in device sizes and the necessity of being flexible and light, the existing batteries are insufficient and nanogenerators have been recognized a suitable energy source in the last decade. The mechanical energy created by the daily activities of the human body is an accessible and natural energy source for nanogenerators. Fiber-structured functional materials contribute to the increase in energy efficiency due to their effective surface to volume ratio while providing the necessary compatibility and comfort for the movements in daily life with its flexibility and lightness. Among the potential solutions, electrospinning stands out as a promising technique that can meet these requirements, allowing for simple, versatile, and continuous fabrication. Herein, wearable electronics and their future potential, electrospinning, and its place in energy applications are overviewed. Moreover, piezoelectric, triboelectric, and hybrid nanogenerators fabricated or associated with electrospun fibrous materials are presented.
Asthma in the context of global alliance against respiratory diseases (GARD) in Turkey
(AME Publishing Company, 2018) Yorgancioğlu,A.; Gemicioglu,B.; Ekinci,B.; özkan,Z.; Bayram,H.; Ergan,B.; Köktürk,N.
[No abstract available]
Biodiversity, drug discovery, and the future of global health: Introducing the biodiversity to biomedicine consortium, a call to action
(Univ Edinburgh, Global Health Soc, 2017) Neergheen-Bhujun, Vidushi; Awan, Almas Taj; Baran, Yusuf; Bunnefeld, Nils; Chan, Kit; Edison Dela Cruz, Thomas; Kagansky, Alexander; Baran, Yusuf
[No Abstract Available]
Biodiversity: the overlooked source of human health
(Cell Press, 2023) Linhares, Yuliya; Kaganski, Alexander; Agyare, Christian; Kurnaz, Isil A.; Neergheen, Vidushi; Kolodziejczyk, Bartlomiej; Bueso, Yensi Flores
Biodiversity is the measure of the variation of lifeforms in a given ecological system. Biodiversity provides ecosystems with the robustness, stability, and re-silience that sustains them. This is ultimately essential for our survival because we depend on the services that natural ecosystems provide (food, fresh water, air, climate, and medicine). Despite this, human activity is driving an unprece-dented rate of biodiversity decline, which may jeopardize the life-support sys-tems of the planet if no urgent action is taken. In this article we show why biodiversity is essential for human health. We raise our case and focus on the biomedicine services that are enabled by biodiversity, and we present known and novel approaches to promote biodiversity conservation.
Bisphosphonate treatment and radiotherapy in metastatic breast cancer
(Humana Press inc, 2008) Ural, A. Ugur; Avcu, Ferit; Baran, Yusuf; Baran, Yusuf
Patients with advanced breast cancer frequently develop metastasis to bone. Bone metastasis results in intractable pain and high risk of pathologic fractures due to osteolysis. The treatment of breast cancer patients with bone metastases requires a multidisciplinary approach. Radiotherapy is an established treatment for metastatic bone pain. It may be delivered either as a localized low dose treatment for localized bone pain or systemically for more widespread symptoms. Bisphosphonates have been shown to reduce morbidity and bone pain from bone metastases when given to patients with metastatic bone disease. In vivo studies indicate that early bisphosphonates administration in combination with radiotherapy improves remineralization and restabilization of osteolytic bone metastases in animal tumor models. This review focused on a brief discussion about biology of bone metastases, the effects of radiotherapy and bisphosphonate therapy, and possible mechanisms of combination therapy in metastatic breast cancer patients.
Cell Proliferation and Cytotoxicity Assays
(Bentham Science Publ Ltd, 2016) Adan, Aysun; Kiraz, Yagmur; Baran, Yusuf; Baran, Yusuf
Cell viability is defined as the number of healthy cells in a sample and proliferation of cells is a vital indicator for understanding the mechanisms in action of certain genes, proteins and pathways involved cell survival or death after exposing to toxic agents. Generally, methods used to determine viability are also common for the detection of cell proliferation. Cell cytotoxicity and proliferation assays are generally used for drug screening to detect whether the test molecules have effects on cell proliferation or display direct cytotoxic effects. Regardless of the type of cell-based assay being used, it is important to know how many viable cells are remaining at the end of the experiment. There are a variety of assay methods based on various cell functions such as enzyme activity, cell membrane permeability, cell adherence, ATP production, co-enzyme production, and nucleotide uptake activity. These methods could be basically classified into different categories: (I) dye exclusion methods such as trypan blue dye exclusion assay, (II) methods based on metabolic activity, (III) ATP assay, (IV) sulforhodamine B assay, (V) protease viability marker assay, (VI) clonogenic cell survival assay, (VII) DNA synthesis cell proliferation assays and (V) raman micro-spectroscopy. In order to choose the optimal viability assay, the cell type, applied culture conditions, and the specific questions being asked should be considered in detail. This particular review aims to provide an overview of common cell proliferation and cytotoxicity assays together with their own advantages and disadvantages, their methodologies, comparisons and intended purposes.
Cell proliferation and cytotoxicity assays
(Bentham Science Publishers B.V., 2016) Baran, Yusuf; Kiraz,Y.; Baran,Y.
Cell viability is defined as the number of healthy cells in a sample and proliferation of cells is a vital indicator for understanding the mechanisms in action of certain genes, proteins and pathways involved cell survival or death after exposing to toxic agents. Generally, methods used to determine viability are also common for the detection of cell proliferation. Cell cytotoxicity and proliferation assays are generally used for drug screening to detect whether the test molecules have effects on cell proliferation or display direct cytotoxic effects. Regardless of the type of cell-based assay being used, it is important to know how many viable cells are remaining at the end of the experiment. There are a variety of assay methods based on various cell functions such as enzyme activity, cell membrane permeability, cell adherence, ATP production, co-enzyme production, and nucleotide uptake activity. These methods could be basically classified into different categories: (I) dye exclusion methods such as trypan blue dye exclusion assay, (II) methods based on metabolic activity, (III) ATP assay, (IV) sulforhodamine B assay, (V) protease viability marker assay, (VI) clonogenic cell survival assay, (VII) DNA synthesis cell proliferation assays and (V) raman micro-spectroscopy. In order to choose the optimal viability assay, the cell type, applied culture conditions, and the specific questions being asked should be considered in detail. This particular review aims to provide an overview of common cell proliferation and cytotoxicity assays together with their own advantages and disadvantages, their methodologies, comparisons and intended purposes. © 2016 Bentham Science Publishers.
Challenges in the preparation of optical polymer composites with nanosized pigment particles: A review on recent efforts
(2012) Demir M.M.; Wegner, G.
Blends of nanosized pigment particles and polymers are widely believed to offer the potential for the design of novel or at least improved materials. This review critically evaluates the recent literature with regard to the following issues: (a) why and how does the size of the particles matter, (b) what are the requirements to create compatibility between amorphous polymers and nanoparticles, (c) carbon allotropes as nanosized pigments, (d) bulk polymerization of monomer/pigment mixtures, (e) interaction of growing chains with the particles in the polymerization, (f) depletion flocculation as a mechanism to counteract homogeneous distribution of the particles in the polymer matrix and ways to suppress the undesirable flocculation, and (g) optical properties of the blends as well as methods of optical characterization. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
Challenges in the Preparation of Optical Polymer Composites With Nanosized Pigment Particles: A Review on Recent Efforts
(Wiley-v C H verlag Gmbh, 2012) Demir, Mustafa M.; Wegner, Gerhard; Demir, Mustafa
Blends of nanosized pigment particles and polymers are widely believed to offer the potential for the design of novel or at least improved materials. This review critically evaluates the recent literature with regard to the following issues: (a) why and how does the size of the particles matter, (b) what are the requirements to create compatibility between amorphous polymers and nanoparticles, (c) carbon allotropes as nanosized pigments, (d) bulk polymerization of monomer/pigment mixtures, (e) interaction of growing chains with the particles in the polymerization, (f) depletion flocculation as a mechanism to counteract homogeneous distribution of the particles in the polymer matrix and ways to suppress the undesirable flocculation, and (g) optical properties of the blends as well as methods of optical characterization.
Changes in molecular biology of chronic myeloid leukemia in tyrosine kinase inhibitor era
(E-century Publishing Corp, 2013) Comert, Melda; Baran, Yusuf; Saydam, Guray; Baran, Yusuf
Chronic myeloid leukemia (CML) is a clonal myeloproliferative disease characterized by a reciprocal translocation between long arms of chromosomes 9 and 22 t(9; 22) that generates the BCR-ABL fusion gene. If left untreated, newly diagnosed chronic phase CML patients finally progress to accelerated and blastic phase. After the introduction of tyrosine kinase inhibitors (TKIs), treatment strategies of CML changed dramatically. However, the development of resistance to TKIs started to create problems over time. In this review, the current information about CML biology before and after imatinib mesylate treatment is summarized.
Comparative development of knowledge-based bioeconomy in the European Union and Turkey
(informa Healthcare, 2014) Ozan, Didem Celikkanat; Baran, Yusuf; Baran, Yusuf
Biotechnology, defined as the technological application that uses biological systems and living organisms, or their derivatives, to create or modify diverse products or processes, is widely used for healthcare, agricultural and environmental applications. The continuity in industrial applications of biotechnology enables the rise and development of the bioeconomy concept. Bioeconomy, including all applications of biotechnology, is defined as translation of knowledge received from life sciences into new, sustainable, environment friendly and competitive products. With the advanced research and eco-efficient processes in the scope of bioeconomy, more healthy and sustainable life is promised. Knowledge-based bioeconomy with its economic, social and environmental potential has already been brought to the research agendas of European Union (EU) countries. The aim of this study is to summarize the development of knowledge-based bioeconomy in EU countries and to evaluate Turkey's current situation compared to them. EU-funded biotechnology research projects under FP6 and FP7 and nationally-funded biotechnology projects under The Scientific and Technological Research Council of Turkey (TUBITAK) Academic Research Funding Program Directorate (ARDEB) and Technology and Innovation Funding Programs Directorate (TEYDEB) were examined. In the context of this study, the main research areas and subfields which have been funded, the budget spent and the number of projects funded since 2003 both nationally and EU-wide and the gaps and overlapping topics were analyzed. In consideration of the results, detailed suggestions for Turkey have been proposed. The research results are expected to be used as a roadmap for coordinating the stakeholders of bioeconomy and integrating Turkish Research Areas into European Research Areas.
Correction to: Enhanced light–matter interaction in a hybrid photonic–plasmonic cavity (Applied Physics A, (2021), 127, 12, (907), 10.1007/s00339-021-05071-x)
(Springer Science and Business Media Deutschland GmbH, 2022) Gökbulut B.; Inanç A.; Topcu G.; Ozcelik S.; Demir M.M.; Inci, M.N.
In this article the statement in the Funding information section was incorrect. The correct Funding information is as follows. ‘Dr Belkıs Gökbulut acknowledges TUBITAK for the financial support provided under Contract Number 120F323’. © The Author(s), under exclusive licence to Springer-Verlag GmbH, DE part of Springer Nature 2022.
Cumulative clinical experience from a decade of use: imatinib as first-line treatment of chronic myeloid leukemia
(Dove Medical Press Ltd, 2012) Baran, Yusuf; Saydam, Guray; Baran, Yusuf
Chronic myeloid leukemia (CML) is a malignant disease that originates in the bone marrow and is designated by the presence of the Philadelphia (Ph+) chromosome, a translocation between chromosomes 9 and 22. Targeted therapy against CML commenced with the development of small-molecule tyrosine kinase inhibitors (TKIs) exerting their effect against the oncogenic breakpoint cluster region (BCR)-ABL fusion protein. Imatinib emerged as the first successful example of a TKI used for the treatment of chronic-phase CML patients and resulted in significant improvements in response rate and overall survival compared with previous treatments. However, a significant portion of patients failed to respond to the therapy and developed resistance against imatinib. Second-generation TKIs nilotinib and dasatinib were to have higher efficiency in clinical trials in imatinib-resistant or intolerant CML patients compared with imatinib. Identification of novel strategies such as dose escalation, drug combination therapy, and use of novel BCR-ABL inhibitors may eventually overcome resistance against BCR-ABL TKIs. This article reviews the history of CML, including the treatment strategies used prediscovery of TKIs and the preclinical and clinical data obtained after the use of imatinib, and the second-generation TKIs developed for the treatment of CML.
Database covering the previously excluded daily life activities
(2023-05-14) Mihçin, Şenay; Şahin, Ahmet Mert; Yılmaz, Mehmet; Alpkaya, Alican Tuncay; Tuna, Merve; Can, Nuray Korkmaz; Şahin, Serap; Akdeniz, Sevinç; Tosun, Aliye
In biomedical engineering, implants are designed according to the boundary conditions of gait data and tested against. However, due to diversity in cultural backgrounds, religious rituals might cause different ranges of motion and different loading patterns. Especially in the Eastern part of the world, diverse Activities of Daily Living (ADL) consist of salat, yoga rituals, and different style sitting postures. Although databases cover ADL for the Western population, a database covering these diverse activities of the Eastern world, specific to these populations is non-existent. To include previously excluded ADL is a key step in understanding the kinematics and kinetics of these activities. By means of developments in motion capture technologies, excluded ADL data are captured to obtain the coordinate values to calculate the range of motion and the joint reaction forces. This study focuses on data collection protocol and the creation of an online database of previously excluded ADL activities, targeting 200 healthy subjects via Qualisys and IMU motion capture systems, and force plates, from West and Middle East Asian populations. Anthropometrics are known to affect kinematics and kinetics which are also included in the collected data. The current version of the database covers 50 volunteers for 12 different activities, the database aims for 100- male and 100- female healthy volunteers as the final target including C3D and BVH file types. The tasks are defined and listed in a table to create a database to make a query based on age, gender, BMI, type of activity and motion capture system. The data is collected only from a healthy population to understand healthy motion patterns during these previously excluded ADLs. The collected data is to be used for designing implants to allow these sorts of activities to be performed without compromising the quality of life of patients performing these activities in the future.
Düzlemsel yüzeyde çalışan lazer işleme makinası
(Türk Patent Enstitüsü, 2017-05-22) Sığırtmaç, Tayfun; Kiper, Gökhan; Dede, Mehmet İsmet Can
Bir sabit gövde, sabit gövde içerisinde hareket edebilir şekilde sağlanan bir tezgâh, sabit gövde ile tezgâhı kısmen örtebilecek şekilde irtibatlı hareketli bir taşıma gövdesi ve taşıma gövdesi üzerinde sağlanan üzerinde lazer kafanın konumlandırıldığı bir taşıyıcı gruba sahip bir lazer işleme makinası, bilhassa bir lazer kesme makinası ile ilgilidir.
Dynamic response of single and multi-span beams under a moving load using dynamic stiffness formulations and Galerkin's method
(European Association for Structural Dynamics, 2020) Bozyigit,B.; Acikgoz,S.; Yesilce,Y.
This paper is concerned with the dynamic response analysis of single and multi-span beams under moving point loads. The Dynamic Stiffness Method (DSM) is used to calculate the mode frequencies and shapes of single, two and four-span Bernoulli-Euler beams. The exact mode shapes obtained from dynamic stiffness formulations are used to derive generalized mass, stiffness and force terms for normal modes using Galerkin 's method. This enables efficient and accurate calculation of the time-history response of the investigated structures. This is demonstrated by comparing the results from this study with advanced finite element simulations of the same problem from the literature. The results validate the accuracy of this approach and demonstrate how this technique can be used to model dynamic amplification of bridges under the influence of moving loads. © 2020 European Association for Structural Dynamics. All rights reserved.
Endogenous miRNA Sponges
(Humana Press Inc., 2022) Akgül, Bünyamin; Akgül,B.
MicroRNAs (miRNAs) are a class of noncoding RNAs of 17–22 nucleotides in length with a critical function in posttranscriptional gene regulation. These master regulators are themselves subject to regulation both transcriptionally and posttranscriptionally. Recently, miRNA function has been shown to be modulated by exogenous RNA molecules that function as miRNA sponges. Interestingly, endogenous transcripts such as transcribed pseudogenes, long noncoding RNAs (lncRNAs), circular RNAs (circRNAs) and mRNAs may serve as natural miRNA sponges. These transcripts, which bind to miRNAs and competitively sequester them away from their targets, are naturally existing endogenous miRNA sponges, called competing endogenous RNAs (ceRNAs). Here we present a historical background of miRNAs, exogenous and endogenous miRNA sponges as well as some examples of endogenous miRNA sponges involved in regulatory mechanisms associated with various diseases, developmental stages, and other cellular processes. © 2022, Springer Science+Business Media, LLC, part of Springer Nature.
Enhanced light-matter interaction in a hybrid photonic-plasmonic cavity (vol 127, 907, 2021)
(Springer Heidelberg, 2022) Gokbulut, Belkis; Inanc, Arda; Topcu, Gokhan; Ozcelik, Serdar; Demir, Mustafa M.; Inci, M. Naci; Demir, Mustafa
[No Abstract Available]
Epitranscriptomics Changes the Play: m6A RNA Modifications in Apoptosis
(Springer, 2022) Akçaöz,A.; Akgül, Bünyamin; Akgül,B.
Apoptosis is a form of programmed cell death that is essential for cellular and organismal homeostasis. Any irregularities that disturb the balance between apoptosis and cell survival have severe implications, such as improper development or life-threatening diseases. Thus, it is highly critical to maintain a proper rate of apoptosis throughout development. In fact, several complex transcriptional and posttranscriptional mechanisms exist in eukaryotes to critically regulate the rate of apoptotic processes. Recent studies suggest that not only RNA sequences but also their modifications, such as m6A methylation, play a fundamental role in these transcriptional and posttranscriptional processes. A specific set of proteins, called writer, eraser, and reader of m6A marks, modulate the rate of apoptosis by determining the m6A repertoire and the fate of certain transcripts associated with apoptosis. In this Review, we will cover the dynamic m6A RNA modifications and their impact on modulation of apoptosis. © 2022, Springer Nature Switzerland AG.
Essential oil loaded mucoadhesive nanocomposite delivery system for gastrointestinal system
(World Intellectual Property Organization, 2016-07-07) Altıok, Duygu; Tıhmınlıoğlu, Funda; Güneş, Suna Seda
Current treatments for H. pylori infection are not efficient enough due to poor diffusion of antibiotics to mucus layer, low stability, side effects and insufficient residence time of antibiotics in gut, antibiotic resistance of H. pylori and allergy of patients against antibiotics. Therefore, alternative therapies including new drugs and therapeutic approaches with enhanced action and reduced side effects are needed to achieve high eradication rate of the bacteria. This invention is related with eradication and/or prevention therapy of H.pylori that provides better diffusion to mucus layer and stabilization in gastric conditions. This invention comprises the local treatment of H.pylori and/or improving the drug release profiles of encapsulated essential oil within chitosan/nanoclay microspheres which could be located in gastrointestinal system. Therefore, the aim of this invention is to encapsulate essential oil in gastroretentive chitosan/nanoclay spheres which has antimicrobial activity against H.pylori and release in a controlled manner in the prior to art.

Browse

Browsing Izmir Institute of Technology by Publication Category "Diğer"